Yep. That will be an issue, but not a surprising one -- almost nothing about the way they shoehorned the existing TRON design into that space is well done.
It probably won't be a concern from inside the park, though, because you won't be able to see TRON from most places. I think by the time you get to a location where you can actually see it, you'll be close enough that the canopy blocks the view of the show building. From that particular angle, that is -- the show building will still be a problem from other places.