I still can't believe people are complaining about the line.
Guys, you have no idea, that line is nothing compared to how pirates was when it reopened, and it is much shorter than the last week that HM was open before it's refurbishment. A 45 minute queue for a newly refurbished classic ride is nothing! I felt lucky that it was so short!
From what I saw, passholders joined the line with everyone else, but were pulled into a seperate line along the side at a certain point and pulled into the building infront of the regular line in large groups (similar to how fastpass works at the other attractions, as to how it "merges", with large groups being pulled out of a long looking line, which actually flows rather quickly.)
The line is always deceiving. Yes, it is an omnimover, but the line doesn't flow that way because the line has to stop each time they close the doors and reopen them for a new group to bring inside. Not sure if I am making sense... I'm trying.
Now if I am mistaken and the line did move slowly... all I have to say is... what did you expect?
Of course it is going to be longer than it was before, it's something new and popular.